PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D05G1981

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB

Protein Properties

Length: 264aa MW: 28529.1 Da PI: 8.3453

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D05G1981	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	31	76	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++ Ede l ++v+ +G+++W++I++ ++ gR++k+c++rw + Gh_D05G1981 31 KGPWSPGEDEALQRLVHTYGPKNWSLISKSIP-GRSGKSCRLRWCNQ 76 79****************************.*********985 PP
2	Myb_DNA-binding	36.2	1.4e-11	85	117	3	37
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtl 37 ++T+eEd+ +++a++q+G++ W+ Iar ++ gRt+ Gh_D05G1981 85 PFTPEEDDTIIQAHAQFGNK-WAIIARLLN-GRTP 117 89****************.*****.*7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	23.917	26	81	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-28	28	118	IPR009057	Homeodomain-like
SMART	SM00717	9.5E-16	30	79	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-17	31	76	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-25	32	90	IPR009057	Homeodomain-like
CDD	cd00167	1.84E-15	33	75	No hit	No description
PROSITE profile	PS51294	9.767	82	126	IPR017930	Myb domain
SMART	SM00717	0.017	82	121	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-9	85	117	IPR001005	SANT/Myb domain
CDD	cd00167	1.05E-7	85	117	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.3E-12	91	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MPGHNSQVTT TTSTSHTSPL PIYVKDLDRI KGPWSPGEDE ALQRLVHTYG PKNWSLISKS 60 IPGRSGKSCR LRWCNQLSPE VQHRPFTPEE DDTIIQAHAQ FGNKWAIIAR LLNGRTPIKR 120 SASLGAANNV SGPCLNLGTP SGSDLSDSSL PAASPGYRPL ARTGSSKHVE TASSTTNPPT 180 ILSLSLPGFD PCENSDSGPR SDPIPSPTQV PVTTVTGHPT AGLVVGMQNG ELGMEKQFFS 240 NEFLTVIQEM IKTEVRNYMF GKFH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	2e-29	30	116	3	89	MYB PROTO-ONCOGENE PROTEIN
1h88_C	9e-29	30	116	6	143	MYB PROTO-ONCOGENE PROTEIN
1h89_C	9e-29	30	116	6	143	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-29	30	116	3	89	C-Myb DNA-Binding Domain
1msf_C	2e-29	30	116	3	89	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012446268.1	1e-165	PREDICTED: transcription factor MYB44-like
Swissprot	Q9FDW1	3e-68	MYB44_ARATH; Transcription factor MYB44
TrEMBL	A0A0D2URN5	1e-174	A0A0D2URN5_G
STRING	POPTR_0002s12410.1	2e-95	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	3e-61	myb domain protein r1